Brain Anatomy and Physiology for Beginners

Try something different. Launch your study of physiology by learning how cells of the brain connect, share and disengage

Brain CellsImage Copyright: Lightspring,

Yes, learn NEURAL anatomy and physiology first. Why? Because the brain puts all the fundamental processes of anatomy physiology to work in one place! And, it is very hard to make sense of how major body organs operate when neural components are left out of the discussion because they come later.

Most textbooks start with specialized tissues under a microscope and move from there into individual organs, usually beginning with skin, bone and muscles. Unfortunately, the master regulatory organ that connects all the systems into a unified whole, the brain, is often discussed last. There is a tenacious myth that the brain is a greater challenge to learn than other organs of the body.

Yet, the brain uses the same biologic infrastructure as all of the body’s other organs, albeit in an exceptionally elegant fashion. The one-organ-at-a-time approach that so often leaves the brain to be taught last downplays the interconnected nature of an intact body.

One benefit of learning the brain first is that a clear understanding evolves of the body’s fluid compartments, ion channels, cell metabolism, electrical membranes, chemical receptors and blood capillaries. These are the basic building blocks of every organ. Each organ is different because it employs a variation of these basic themes.

A second benefit of studying the brain first is that the concepts of communication within the body and physiologic cause and effect clearly emerge. Each body organ is influenced by ongoing events in the remaining organs making communication necessary. The three master communication systems connecting distant parts of the body are the nervous system orchestrated by the brain, the cardiovascular system and the endocrine system. Because the master communication systems interact so efficiently, any physiologic cause (i.e. deviance from a set point) that affects one part of the body results in an effect everywhere.

Common Themes

Fluid Compartments

Maintenance of the composition of the body’s fluid compartments, cytoplasm, interstitial fluid, blood and in the brain cerebrospinal fluid, very seldom gets the attention it deserves. Yet, a major portion of the body’s total metabolic energy is devoted to this process. And, nowhere in the body is maintenance of the fluid compartments more elegantly accomplished than in brain, because a constant difference in the quality of the fluids is the basis of the brain’s electrical activity.

Variations of the brain’s methods for quality control of cytoplasm and interstitial fluid are used by every organ of the body. A stable difference in the concentration of electrical particles, charged ions, in these two fluid compartments is equally important at skeletal muscle and cardiac muscle. It is also vital to the kidney’s process for cleaning waste material from blood and a myriad of other physiologic processes. Understanding this aspect of physiology delivers a platform that simplifies study of all the remaining organs.

Ion Channels

Well-documented ion channels in the membranes of brain cells that are responsible for its electric signaling represent another prototype used widely throughout the body. Ion channels are composed of large proteins that snake through the lipid layers of a cell’s membrane. They form passages friendly to water-soluble molecules and they respond to triggers that open and close them.

When ion channels are open, the cytoplasm within a cell is able to communicate with the interstitial fluid surrounding the cell. Different organs use various means to control the opening and closing of their membrane channels. While triggers that regulate the channels vary from cell to cell, the ion channels themselves are fairly similar in structure. Various outcomes gained by the presence of ion channels depend upon the strategic location of the channel proteins and their physiologic triggers. Controlled cross-talk between cytoplasm and interstitial fluid is an explanation employed by physiologists for major functions of all the body’s organs.

Receptors & Ligands

Another type of specialized protein used throughout the body is named a receptor. This broad class of proteins found at various locations within cells and attached to membranes, initiate a change in cell processes when they encounter a specific small molecule called a ligand. The brain uses a wide variety of ligands called neurotransmitters for its receptors.

Information is passed around in the brain by neurotransmitter. Neurotransmitters released by one neuron activate receptors on neighboring neurons setting in motion changes in the receptor bearing cells. This receptor ligand interaction and subsequent cellular response is the same paradigm used by hormones throughout the body to exert their effects. While details of the outcome of activation of brain receptors is different than the outcome of receptor-ligand interaction in the rest of the body, the design of the receptor proteins follow the same patterns everywhere.

Dynamic Anatomy

It is so easy in anatomy class to believe that human anatomy is fixed. So much time is focused upon learning the names and placement of muscles and bones that it is possible to forget anatomy is constantly being restructured within the range of a particular pattern. In reality, anatomy can be thought of as a 3D printout of an organ’s physiology with the fine details being constantly remolded.

There was also a time when neuroscientists thought that the neuron connections in the brain were fixed in place once the brain finished maturing at puberty. Now it is clear that connections between neurons come and go depending upon how actively they are used. It is also believed that neurons act together in groups and that the efforts shared by various groups shifts with time depending upon environmental circumstances.

Adopting the idea of a system in motion is a great first step for students new to human physiology. Textbooks draw everything including the basic molecules, fat, protein and sugars, as static pictures. While such drawings help to describe the basic structures they represent the real entity very poorly. All parts of these building blocks of the living body are in constant motion. And because the molecules are mobile, all of the organs of the body are a beehive of activity.

Where to Begin

So where are you to begin your study of the brain? I have just authored a new book you may like to read. It is titled “Inside the Closed World of the Brain, How brain cells connect, share and disengage—and why this holds the key to Alzheimer’s disease.” It is written for beginners. Anyone with a high school education will find it readable. It includes the basics of brain anatomy, physiology and a foray into the pathology of “When It All Goes Wrong—Alzheimer’s Dementia.”

To get you started for FREE here is the first chapter titled “Tips & Tricks for Learning Scientific Language.”

These earlier posts about the brain may also be of interest to you.

Neurons: Where Does Their Electricity Come From?

Dendritic Spines

What is a Brain Activity Map?

Astrocytes and Energy in Brain


Ependymal Cells

Microglia Maintenance of Neuron Synapses

Birth of Neurons Continues in Human Brain into 5th Decade

If you enjoyed reading this, please share it with friends and fellow students on social media by clicking an icon below. Comments are always welcome. Please let me know what you are thinking about your study of anatomy and physiology.


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